Package: R2jags 0.8-10

R2jags: Using R to Run 'JAGS'

Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.

Authors:Yu-Sung Su [aut, cre], Masanao Yajima [aut], Gianluca Baio [ctb]

R2jags_0.8-10.tar.gz
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R2jags_0.8-10.tgz(r-4.6-any)R2jags_0.8-10.tgz(r-4.5-any)
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manual.pdf |manual.html
card.svg |card.png
R2jags/json (API)
NEWS

# Install 'R2jags' in R:
install.packages('R2jags', repos = c('https://suyusung.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/suyusung/r2jags/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

jagscpp

10.75 score 10 stars 46 packages 3.8k scripts 11k downloads 121 mentions 10 exports 14 dependencies

Last updated from:c96b030e70. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE120
source / vignettesOK149
linux-release-x86_64NOTE114
macos-release-arm64NOTE157
macos-oldrel-arm64NOTE143
windows-develNOTE90
windows-releaseNOTE77
windows-oldrelNOTE86
wasm-releaseOK92

Exports:attach.jagsautojagscount_nodesdetach.jagsjagsjags.paralleljags2jags2bugsrecompiletraceplot

Dependencies:abindbootclicodagluelatticelifecyclemagrittrR2WinBUGSrjagsrlangstringistringrvctrs

Readme and manuals

Help Manual

Help pageTopics
Attach/detach elements of 'JAGS' objects to search pathattach.jags detach.jags
Function for auto-updating 'JAGS' until the model convergesautojags update.rjags
Retrives the information from the JAGS compilationcount_nodes
Run 'JAGS' from Rjags jags.parallel jags2 rjags-class rjags.parallel-class
Read jags output files in CODA formatjags2bugs
Function for recompiling rjags objectrecompile recompile.rjags
Trace plot of bugs objecttraceplot traceplot,bugs-method traceplot,mcmc.list-method traceplot,rjags-method traceplot.default